Substitution Matrices for Intrinsically Disordered Proteins | Quick Intro | Installation | Background and Motivation | Matrices | EDSS Matrices | "Disorder" Matrices | DUNMat | Examples | Pairwise Sequence Alignments (PSAs) | Multiple Sequence Alignments (MSAs) | Distance Trees | References | Packages | Citations | Additional Information

Background | Installation | Methods | Example calulations | Using the chargeHydropathyPlot Function | Using FoldIndexR to predict folded and unfolded windows. | Calculating Scaled Hydropathy | Mean Scaled Hydropathy | Global Hydropathy | Local Hydrophobicity | Calculating Charge | Net Charge | Global Charge Distibution | Local Charge | References | Packages Used | Citations | Additional Information

idpr: A Package for Profiling and Analyzing Intrinsically Disordered Proteins in R. | Installation | Profiling | Charge-Hydropathy Plot and FoldIndex | Structural Tendency Plot | Local Charge Calculations | Local Hydropathy | IUPred | Visualizing Discrete Values | Substitution Matrices for Analyzing IDPs | References | Additional Information

Fetching IUPred Predictions of Intrinsic Disorder | Quick Start | Background | Installation | iupred function and iupredType arguments. | iupredType = "long" | iupredType = "short" | iupredType = "glob" | iupredAnchor | iupredRedox | Additional Example | Getting the UniProt Accession | Use | References | Additional Information

Introduction | Installation | Basics of sequenceMap | Customizations | Getting Coordinates | Sequence Plot | References | Packages Used | Citations | Additional Information

Background | Installation | Quick-use guide | structuralTendency In Detail | structuralTendencyPlot In Detail | References | Citations | Additional Information